PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA73G00022
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family SBP
Protein Properties Length: 395aa    MW: 44477.9 Da    PI: 8.5319
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA73G00022genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.85.4e-42138213277
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 Cqv gC++dl++ k+yh+rh+vCe+hsk+++v+vsg++qrfCqqCsrfh l efD++krsCrrrLa+hn+rrrk++
  AA73G00022 138 CQVYGCNMDLTSSKDYHKRHRVCEIHSKTSMVIVSGIQQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNQRRRKPS 213
                 **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-33133199IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.718135212IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-39136215IPR004333Transcription factor, SBP-box
PfamPF031104.2E-32138211IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDSWRSVFLA NGTDLPSDCL TNTRKVMAGW DQRLSNDMEN DIFISQLPDK NFSDLAAKSF  60
GFNTSKVASS CLFPSNSLDD EEKEKEASSN FSSLVSQELP RIDFKLSSLL DYSNSKESGL  120
SAKKQPRGAN SCSEKPLCQV YGCNMDLTSS KDYHKRHRVC EIHSKTSMVI VSGIQQRFCQ  180
QCSRFHLLAE FDDGKRSCRR RLAGHNQRRR KPSFYFLPGR RHKVLHTSQG ILRLCFFMCS  240
NLSESETSYV SLSGNKCVEN SLVLPEAFPS GRLVKFKDES SCSIISSSSS RIYQWKPVSS  300
SSSEESSIWD IHEASRSTCA LSLLSAKSQQ VSANQNKPNH MGSPLMDSSK SSSSYIKGSS  360
TVDLLQLSLH LQRIEQQRNF SEVKHEYKDL YFPDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30128211184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA73G00022
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391054.11e-134squamosa promoter-binding-like protein 6
RefseqXP_024007394.11e-134squamosa promoter-binding-like protein 6
RefseqXP_024007399.11e-134squamosa promoter-binding-like protein 6
SwissprotQ94JW81e-119SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBLV4JSQ41e-133V4JSQ4_EUTSA; Uncharacterized protein
STRINGXP_006391054.11e-133(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-108SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]