PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA75G00035
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 146aa    MW: 17372.7 Da    PI: 5.3832
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA75G00035genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.51.2e-31171361128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                 lppGfrF+P de+lv eyL+kkv   ++++   ++e++ ++++PwdL     +++ke+yfF+k+++ +    rk++ t+sgyW++  +++ v+++  ++
  AA75G00035  17 LPPGFRFDPDDEDLVFEYLAKKVLYLPMDF--DLPELRSCNADPWDLL---GEKNKEVYFFVKKEEME----RKRKETSSGYWEECEEEE-VMHQanGR 105
                 79*************************999..49*************6...56789*******99875....888999******987755.55543555 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                    g +kt +fy gr+p+g+ t W+m e+rl
  AA75G00035 106 GFEGRRKTYAFYIGRKPRGTITPWIMYEFRL 136
                 569**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-346141IPR003441NAC domain
PROSITE profilePS5100533.42417146IPR003441NAC domain
PfamPF023651.3E-1918136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MDISTQRFAM NGRSMKLPPG FRFDPDDEDL VFEYLAKKVL YLPMDFDLPE LRSCNADPWD  60
LLGEKNKEVY FFVKKEEMER KRKETSSGYW EECEEEEVMH QANGRGFEGR RKTYAFYIGR  120
KPRGTITPWI MYEFRLLSSS ISQVSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-191514015146NO APICAL MERISTEM PROTEIN
1ut4_B7e-191514015146NO APICAL MERISTEM PROTEIN
1ut7_A7e-191514015146NO APICAL MERISTEM PROTEIN
1ut7_B7e-191514015146NO APICAL MERISTEM PROTEIN
3swm_A9e-191514018149NAC domain-containing protein 19
3swm_B9e-191514018149NAC domain-containing protein 19
3swm_C9e-191514018149NAC domain-containing protein 19
3swm_D9e-191514018149NAC domain-containing protein 19
3swp_A9e-191514018149NAC domain-containing protein 19
3swp_B9e-191514018149NAC domain-containing protein 19
3swp_C9e-191514018149NAC domain-containing protein 19
3swp_D9e-191514018149NAC domain-containing protein 19
4dul_A7e-191514015146NAC domain-containing protein 19
4dul_B7e-191514015146NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA75G00035
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402058.15e-75NAC domain-containing protein 41
TrEMBLA0A1J3H2V22e-75A0A1J3H2V2_NOCCA; NAC domain-containing protein 55 (Fragment)
STRINGXP_006402058.12e-74(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.14e-71NAC domain containing protein 97