PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA76G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 144aa    MW: 16631.3 Da    PI: 6.6499
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA76G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.2e-12340340
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                +en   r+  +  R +g+ KKA+ELS LCd+++++i +
  AA76G00002  3 VENRKERKAVYKIRTQGLAKKANELSLLCDVKACLIFY 40
                589999******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.46141IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-14289IPR002100Transcription factor, MADS-box
CDDcd002664.60E-16284No hitNo description
PfamPF003192.1E-11341IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MWVENRKERK AVYKIRTQGL AKKANELSLL CDVKACLIFY NLDAADNDND DEKLMVWPSY  60
DIAKSLIDNF LTLPDFLKNR KALDPESFTQ GIFLEFLFQY QDFAQSINGM RIDSGLSEVV  120
ALVVMIFGYR LLAYLSLRRM KVGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA76G00002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399123.14e-23MADS-box transcription factor PHERES 2
TrEMBLV4N5601e-21V4N560_EUTSA; Uncharacterized protein
STRINGXP_006399123.12e-22(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-21AGAMOUS-like 96