PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA76G00026
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 268aa    MW: 30260.9 Da    PI: 7.5576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA76G00026genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-08198243655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR+ i +++ +L++l P      +k  s a++L +Av  Ik+Lq
  AA76G00026 198 SIAERVRRNGISQRMKKLQDLFPDM----DKQSSTADMLDLAVSEIKELQ 243
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.659192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-12194253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.04E-8196247No hitNo description
Gene3DG3DSA:4.10.280.107.8E-11197251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-8198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5198243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDPYDLNQQQ INALNDLVGD VDEDYQTFVS PSSEMDSFFA EVMKTEERMQ ESRDSGYGGG  60
LVRQHSSPAG FLSNLMMDND FSRDFSNSNS GNGETSWSKM KSEHMLPLSR LGTIIPQASS  120
NVFGGNNITF SDLETQSLIS VLFNIKNAGC SRKKLTSHSS LPTTFSERNR VDKFLHFQEK  180
TVPFKVRARR GFATHPRSIA ERVRRNGISQ RMKKLQDLFP DMDKQSSTAD MLDLAVSEIK  240
ELQREVKDLK SIRGKCSCYG KGDQKQEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA76G00026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557784.14e-80PREDICTED: transcription factor bHLH130-like
STRINGXP_010557784.11e-79(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2538023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-35bHLH family protein