PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA77G00007
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 296aa    MW: 32495.6 Da    PI: 9.3402
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA77G00007genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-1266110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
       AA77G00007  66 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 110
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1660116IPR009057Homeodomain-like
PROSITE profilePS5129413.75861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-664116IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-1864113IPR006447Myb domain, plants
SMARTSM007179.6E-1065113IPR001005SANT/Myb domain
PfamPF002495.5E-1066110IPR001005SANT/Myb domain
CDDcd001671.13E-768111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MLSVTPNPFH HAFLFDPTAM SVPPLGTTSS SSSPAAVADA AATASVSSSE DPSKKIRKPY  60
TITKSRESWT EPEHDKFLEA LQLFDRDWKK IEAFIGSKTV IQIRSHAQKY FLKVQKSGTG  120
EHLPPPRPKR KAAHPYPQKA PKNGVNMQPQ VPGSFKSTAE PQDPSYMFRP DSSSMLMNSP  180
TTGAAPPWTN NGQTISFTPI PKAGVGANNN CSSSSENTPR TRPSRDTNDQ ANVGHSLRVL  240
PDFSQVYSFI GSVFDPCASD HLQKLKKMDP IDVETVLLLM RNLSINLSSP DFEDHF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA77G00007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280712.21e-157protein REVEILLE 6 isoform X2
SwissprotQ8H0W31e-157RVE6_ARATH; Protein REVEILLE 6
TrEMBLR0GMQ91e-155R0GMQ9_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0084s0014.1.p1e-156(Capsella grandiflora)
STRINGXP_006280712.11e-156(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-137MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]