PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA78G00039
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 347aa    MW: 38574.8 Da    PI: 6.176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA78G00039genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.4e-10190237455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  AA78G00039 190 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 237
                 8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.94E-10184241No hitNo description
SuperFamilySSF474593.93E-17184256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-18186255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDKEKEQTLN YLPITQTDPF SNASDGMIGD FIGRFCNTQE ISPLTLQSFS MNPQISENFP  60
IRFPYPGQFR SDREYGVLGS QPTTQESSKS SLLDPDSVSA VSDRAQTTKS NSRKRKSITN  120
GNGKESPASS SLTASNSKIS EENGATKTGK RSKQDEKCDS KEDNKEDAKA PEPPKDYIHV  180
RARRGQATDS HSLAERARRE KISERMTLLQ DLVPGCNRIT GKAVMLDEII NYVQSLQRQV  240
EFLSMKLATL NPRMEFNANA ALSTEMMQAG ESLTQSLFAI GCSESRIPSG YYSHAKNMPR  300
FSETHFSLNS SSDGFVQAET PTFWENDLQS IVQMGFGDIQ QQNNNGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA78G00039
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887229.10.0transcription factor bHLH77
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLD7L3G10.0D7L3G1_ARALL; Predicted protein
STRINGBostr.19424s0266.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]