PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA78G00043
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 371aa    MW: 41158.2 Da    PI: 6.2777
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA78G00043genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.2e-14187233354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  AA78G00043 187 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 233
                 79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-11187233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-14188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-15188246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-13190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.90E-5197236No hitNo description
Gene3DG3DSA:3.30.70.2602.8E-4273340No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MCAKKEEEEA ECSGAMNNIQ KYQNDLFFHQ LITHQPQSTT SDIFGTTSSS NIGSASSGFT  60
IFSQDSISPI SLPWPLPLPS SQQQQQPFNP TRQELDPFLL HPPSPPPPSF YGNYFNRNRP  120
HLGLQFGYEG FTGATSASHH HHEQLRILSE ALGPVVQTGS GPFGLQGELG KMTSQEMMDA  180
KALAASKSHS EAERRRRERI NNHLAKLRSI LPNTTKTDKA SLLAEVIQHV KELKRETSMA  240
TETNMMPTES DELMVSFSEE EEIGDGRFVI KASVCCDDRS DLLPDMIKTL KALRLKTLKA  300
EITTVGGRVK NVLFVTGEES SGEEYCIGTI EEALKAVMEK SSVEEPSSSA NAKRQRMSNN  360
SITIVEHQHH R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA78G00043
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391094.10.0transcription factor bHLH30
SwissprotQ9S7Y11e-172BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1J3GAQ20.0A0A1J3GAQ2_NOCCA; Transcription factor bHLH30
STRINGXP_006391094.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-140bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]