PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA797G00002

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bZIP

Protein Properties

Length: 453aa MW: 51048.2 Da PI: 6.2771

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA797G00002	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.5e-10	167	207	6	43
HHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNk 43 rr+++NReAAr+sR+RKka++++Le+ + ++Le+e k AA797G00002 167 TLRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEEVK 207 5699**********************974446777777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-7	158	212	No hit	No description
SMART	SM00338	4.6E-4	162	222	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.013	164	208	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.3E-6	166	205	No hit	No description
Pfam	PF00170	1.1E-6	167	207	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	169	184	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.5E-28	252	325	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
SSFKTVPPPF NSDFYSQSSF FFRGEEDNGL EDFHQPTTCF HHQDSLHLTP NVTVASSNLH 60 YATFNTAMDC GLRDRLEGEE ECLDTGQLVL QTRVRRGEVK GHCNNNNNSL EKWCDSVSAM 120 ADNSQHTDTS TDIDTDDKTQ FNGIQQGMLL ATDCTDQSKV KSGDQRTLRR LAQNREAARK 180 SRLRKKAYVQ QLENSRIRLA QLEEEVKRTR QQGCLVESGV SGDQAAYVAA GSCAFSFELE 240 YGRWLEEHQR LINDLRSGVN SQLGDNELRV LVDAVMAHYD EIFRLKGIGS KVDVFHMLSG 300 MWKTPAERFF MWLGGFRSSE LLKILGNHVD PLTDQQLIGI CNLQQSSQQA EDALSQGMEA 360 LQQSLLETLS SASIGPNSSA NVADYMGHMA MAMGKLGTLE NFLRQADLLR QQTLQQLHRI 420 LTTRQAARAF LVIHDYICRL RALSSLWLAR PRE

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

SSFKTVPPPF NSDFYSQSSF FFRGEEDNGL EDFHQPTTCF HHQDSLHLTP NVTVASSNLH  60
YATFNTAMDC GLRDRLEGEE ECLDTGQLVL QTRVRRGEVK GHCNNNNNSL EKWCDSVSAM  120
ADNSQHTDTS TDIDTDDKTQ FNGIQQGMLL ATDCTDQSKV KSGDQRTLRR LAQNREAARK  180
SRLRKKAYVQ QLENSRIRLA QLEEEVKRTR QQGCLVESGV SGDQAAYVAA GSCAFSFELE  240
YGRWLEEHQR LINDLRSGVN SQLGDNELRV LVDAVMAHYD EIFRLKGIGS KVDVFHMLSG  300
MWKTPAERFF MWLGGFRSSE LLKILGNHVD PLTDQQLIGI CNLQQSSQQA EDALSQGMEA  360
LQQSLLETLS SASIGPNSSA NVADYMGHMA MAMGKLGTLE NFLRQADLLR QQTLQQLHRI  420
LTTRQAARAF LVIHDYICRL RALSSLWLAR PRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA797G00002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300957.1	0.0	transcription factor PERIANTHIA isoform X1
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	V4MB25	0.0	V4MB25_EUTSA; Uncharacterized protein
STRING	XP_006391115.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	0.0	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]