PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA85G00014

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HSF

Protein Properties

Length: 314aa MW: 35684.8 Da PI: 5.7252

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA85G00014	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110	1.7e-34	23	115	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+ye+++d++++ li+w +nsf+v+d+ +f+++vLp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++ll++i AA85G00014 23 FVLKTYEMVNDPATDWLITWGPANNSFIVVDPLDFSHRVLPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQRHLLRNIA 110 9******************999*************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ AA85G00014 111 RRKHA 115 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	5.7E-55	19	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.6E-37	20	112	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	7.21E-34	20	112	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.3E-18	23	46	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.4E-30	23	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-18	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	62	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-18	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006970	Biological Process	response to osmotic stress
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEDDKNNNNN NTSSSNSNVI APFVLKTYEM VNDPATDWLI TWGPANNSFI VVDPLDFSHR 60 VLPAYFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEHFLR GQRHLLRNIA RRKHARVQDL 120 DDGEIIREIE RLKEEQKDLE AEIQRMTQRI EATERRPDQM MAFLYKVVED PELLPRMMME 180 KGQIKQVATV PEKKRRVTVK SEEGEEGDGR IHGVISSPSS SENSRGWVVP LQRQGQFGNY 240 ETNCDFSSMI SNSSSSSASS TLTSTLSLPE SINGGCGNIT GETWFKETAT FGGVVESNPP 300 PPPPYPFSLF RGGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-25	13	112	20	129	Heat shock factor protein 1
5d5v_B	1e-25	13	112	20	129	Heat shock factor protein 1
5d5v_D	1e-25	13	112	20	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00379	DAP	Transfer from AT3G24520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA85G00014

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010466868.1	1e-146	PREDICTED: heat stress transcription factor C-1
Swissprot	Q9LV52	1e-135	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A398A2M1	1e-142	A0A398A2M1_BRACM; Uncharacterized protein
STRING	XP_010466868.1	1e-145	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6775	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	1e-117	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]