PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA87G00007
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 569aa    MW: 63867.3 Da    PI: 6.0191
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA87G00007genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.33.5e-5491351127
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp GfrF+Ptdeelv++yL+ k++g++ ++ +vi++vd++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat+sgyWkatgkd++++s k+
  AA87G00007   9 LPLGFRFRPTDEELVNHYLRLKINGRHSDV-RVIPDVDVCKWEPWDLPglSVIKTDDPEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRTIKS-KK 105
                 699************************999.99***************6447888899**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyr 127
                 +l+g+kktLvfy+grapkge+t+W+mheyr
  AA87G00007 106 TLIGMKKTLVFYRGRAPKGERTNWIMHEYR 135
                 9****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-605146IPR003441NAC domain
PROSITE profilePS5100555.669191IPR003441NAC domain
PfamPF023651.4E-2810135IPR003441NAC domain
SuperFamilySSF1019414.97E-60179191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MGAVSMDSLP LGFRFRPTDE ELVNHYLRLK INGRHSDVRV IPDVDVCKWE PWDLPGLSVI  60
KTDDPEWFFF CPRDRKYPNG HRSNRATDSG YWKATGKDRT IKSKKTLIGM KKTLVFYRGR  120
APKGERTNWI MHEYRPTLKE LDGTAPGQVG FLFLILCLLS LHVSRVYSSD VVFLYTDPFQ  180
SPFVLCRLFH KPDDRVNGVK SDESEQAGIA HPTNNYSPDE TSSDLVQETA TSDNAVEKPS  240
HDSGTWLTGM LANADVDVDS MLTNGRCGYG HMNSDDAEDH MADETLVEAH AFHGENPSLS  300
WLTSEFIDQR SSPHMESPHS SDFNNGVIGS HFQDGTSEPD VSLTELLEEV FNNPDEFSCE  360
ESTSQENPVN GILSSGKIMQ SATPDYAFLN DFITYSDTDA EMVHLQYGSD RGASGWPNPT  420
YPATNSNYNN FSQPEQMINH DSKHNLTKGR GIKIRARQPP NQPNTGLVNQ GIAPRRIRLQ  480
MHSSSVPLDG KNKFDVKQGE GMSELMVMPE AREAVIKYSN NTEALVKPQM KIRARRTIGE  540
VKSGKATENE VRTTYCGCVN VKKELRKLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-44813514139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA87G00007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634964.10.0protein NTM1-like 9 isoform X2
SwissprotF4JN350.0NTL9_ARATH; Protein NTM1-like 9
TrEMBLR0H2V40.0R0H2V4_9BRAS; Uncharacterized protein
STRINGCagra.2350s0100.1.p0.0(Capsella grandiflora)
STRINGXP_006286077.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.20.0NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]