PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA87G00018

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Dof

Protein Properties

Length: 275aa MW: 30462.7 Da PI: 7.2662

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA87G00018	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.8	4.1e-37	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC s++tkfCyynnysl+qPry+CkaCrryWt+GG+lr +P+Gg++rk k+ss AA87G00018 16 KEEALSCPRCSSKDTKFCYYNNYSLTQPRYLCKACRRYWTHGGSLRSIPIGGSSRKIKRSS 76 68999***************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-23	9	67	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.521	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDTSQLSQER VRREEKEEAL SCPRCSSKDT KFCYYNNYSL TQPRYLCKAC RRYWTHGGSL 60 RSIPIGGSSR KIKRSSASSS KKPLLPHKRP LKSITQKHDE VKAQDFGVSQ DEEVKDFSQG 120 FGTPRLSEFL QLPTINDTSL VSSSSSAMEL QGISNSSTSS NPPNSTFMAF PNFHHHSLYP 180 AASSGTGFAL SYDFLRPPLG FSLDETLNLQ EGSKGSHASS IRQETHLFPL ESLKFPASST 240 STNSGGRAHE EEEEEAEQTA GFWTGMLADG NVSWQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA87G00018

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002887870.1	3e-60	dof zinc finger protein DOF1.8
Swissprot	Q84JQ8	5e-54	DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBL	D7KS75	6e-59	D7KS75_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.2__13__AT1G64620.1	1e-59	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	3e-44	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340]