PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA87G00083
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 222aa    MW: 25939 Da    PI: 4.7654
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA87G00083genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.11.2e-17121411128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                 lp+G+rF+P+d e+  ++L +k+ + ++++  v +++ di+  +P+d+p   +++ek+ yfF++++k++a     n    s  W + g+d +v++   +
  AA87G00083  12 LPVGYRFRPSDYEISAYFLSRKAFDLPFKCRFVPEDChDIFFRHPRDMPG--DTSEKHRYFFCRKHKNEA----IN---LSDHWIQIGEDINVTDPinN 101
                 799***************************77778889***********4..4578999*****988654....22...3567***********99889 PP

         NAM  97 gelvglkktLvfy........kgrapkgektdWvmheyrl 128
                 ++lvg+k+ +++             +k+ k +W+m+ey+l
  AA87G00083 102 DQLVGIKRPFALIwhqesdnfGFCIEKSPKYTWFMNEYSL 141
                 999*****98887555443321233556699*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-266162IPR003441NAC domain
PROSITE profilePS5100527.2312162IPR003441NAC domain
PfamPF023651.4E-1013141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MERSSLMKVQ PLPVGYRFRP SDYEISAYFL SRKAFDLPFK CRFVPEDCHD IFFRHPRDMP  60
GDTSEKHRYF FCRKHKNEAI NLSDHWIQIG EDINVTDPIN NDQLVGIKRP FALIWHQESD  120
NFGFCIEKSP KYTWFMNEYS LPVTVDSSET EFKWVLCHVF RKKIKAKTTS LFCDFNGGFN  180
GEESEGESFV ALSANKSQEQ EDEEGEEGVV LSGNESDEEL CW
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA87G00083
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191211.16e-53NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBLA0A178VFA98e-54A0A178VFA9_ARATH; Uncharacterized protein
STRINGAT3G56520.12e-52(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.12e-56NAC family protein