PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA87G00198
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CO-like
Protein Properties Length: 300aa    MW: 33806.3 Da    PI: 5.4212
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA87G00198genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07445540
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 C+ +  +++  +Ce+++  lC  C +++H+       Ht++
  AA87G00198  4 QCDYCITEPALVYCESDSAKLCLHCDVSIHSAnpvsqrHTRS 45
                7*****************************667888888875 PP
2CCT621.9e-21243287145
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                 Re+a++RY+eKr++R F K+irY+sRKa+A++R+RvKGrFvk++e
  AA87G00198 243 REEAKKRYREKRSRRMFGKQIRYASRKARADTRKRVKGRFVKSSE 287
                 9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.357147IPR000315B-box-type zinc finger
SMARTSM003364.4E-10147IPR000315B-box-type zinc finger
PfamPF006431.4E-5445IPR000315B-box-type zinc finger
CDDcd000213.91E-6547No hitNo description
PROSITE profilePS5101715.1243285IPR010402CCT domain
PfamPF062039.2E-17243285IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAAQCDYCIT EPALVYCESD SAKLCLHCDV SIHSANPVSQ RHTRSLLCGK CLSQPAIVHC  60
LDDKVSLCQG CHCTASNCSS LQHRLQTLNP YSGCPSFSDF AEIWSPILEQ SISTRVPKNP  120
SNNALLEMTK IEDICEGINF DDAPLSFNAS DDIFGCSQYD QIKYEFCEDI IIKPENTLNV  180
IESNIIEMNN QVLNSVPTIS SDVVSNSSIS MSSNMIDYQD CVLPLDFSIP DFSNLEVRCP  240
KSREEAKKRY REKRSRRMFG KQIRYASRKA RADTRKRVKG RFVKSSESYD EIDLSNDIMI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA87G00198
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019088020.11e-102PREDICTED: putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233793e-95COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLD7MAK37e-97D7MAK3_ARALL; Zinc finger (B-box type) family protein
STRINGXP_010440319.11e-102(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.16e-87B-box type zinc finger protein with CCT domain