PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA87G00308

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 242aa MW: 27212.7 Da PI: 8.2075

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA87G00308	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	4.8e-10	87	134	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq AA87G00308 87 SHSLAERARREKISERMKFLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 134 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.27E-16	81	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.49E-9	81	138	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.1E-17	83	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.618	83	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-7	87	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.5E-9	89	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDPDSVSRPS KNKPNSRKRK SIPSPASSSL TASNSKISDQ NCASIAPKRS KKEANKNTDK 60 KDDDTKVPEP HKDYIHVRAR RGQATDSHSL AERARREKIS ERMKFLQDLV PGCNKITGKA 120 VMLDEIINYV QSLQTQVEFL AMKLATINPR FELNSNSILS TELTQCMYSE ERYSSGCLAI 180 DKNQLQLTSL STSMPSSDGF VQVPTLWEND LESIVQMGFG DSQHESLICT ERNVEMKLEL 240 ER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	20	SRKRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA87G00308

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006418851.1	6e-98	transcription factor bHLH77
Swissprot	Q9LK48	3e-92	BH077_ARATH; Transcription factor bHLH77
TrEMBL	V4L4R9	1e-96	V4L4R9_EUTSA; Uncharacterized protein
STRING	XP_006418851.1	2e-97	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7406	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	4e-74	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]