PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA894G00001

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

WOX

Protein Properties

Length: 222aa MW: 25229.3 Da PI: 9.3049

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA894G00001	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.3e-21	81	140	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ AA894G00001 81 TRWNPTQEQIGILEMLYRSgMRTPNAQQIEHITSQLgqygKIEGKNVFYWFQNHKARERQ 140 7***************99************************************97 PP
2	Wus_type_Homeobox	118.5	2.9e-38	81	142	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+sG+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq AA894G00001 81 TRWNPTQEQIGILEMLYRSGMRTPNAQQIEHITSQLGQYGKIEGKNVFYWFQNHKARERQKQ 142 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.252	76	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-13	77	146	IPR009057	Homeodomain-like
SMART	SM00389	6.4E-8	78	145	IPR001356	Homeobox domain
CDD	cd00086	3.38E-5	81	142	No hit	No description
Pfam	PF00046	7.6E-19	81	140	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.1E-8	82	140	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MRIHHFSNGC SSWDQHDSLS LNCKRLRPLA PKLSGPSSPP SSSSGITSAI FDLKSFIKPH 60 NDFPVDHKGD PSQVETHPGG TRWNPTQEQI GILEMLYRSG MRTPNAQQIE HITSQLGQYG 120 KIEGKNVFYW FQNHKARERQ KQKRNSLSSQ STFKTRTSLS LDLSRESTVE KESCEEIANK 180 RTCRSWGFEN LEIERKINNG TGANICIHNV TLELFPLHPE AR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA894G00001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305551.1	1e-103	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	1e-95	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	R0I7Y8	1e-101	R0I7Y8_9BRAS; Uncharacterized protein
STRING	Cagra.1735s0007.1.p	1e-103	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	8e-98	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]