PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA8G00027

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Nin-like

Protein Properties

Length: 184aa MW: 21770.2 Da PI: 10.3909

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA8G00027	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.9	1.7e-27	68	117	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k i+ e++s+yFs+pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl AA8G00027 68 KCITREEISQYFSMPITKAAKELNIGLTLLKKKCRELGIPRWPHRKLMSL 117 789********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.383	48	139	IPR003035	RWP-RK domain
Pfam	PF02042	4.3E-23	70	117	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSGFWNEINR YNNAETKPNI DETTLQTHNT QNQDLELKIS KDNNTKKEET LIKKRTKVKI 60 ESYNSSSKCI TREEISQYFS MPITKAAKEL NIGLTLLKKK CRELGIPRWP HRKLMSLQTL 120 ITNIKELGKV EGEMGESKVR NAVEILEREK QKIEEIPDLE FEDKTKRLRQ ACFKAKYKRR 180 RRRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	182	KRRRRR
2	177	183	KRRRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA8G00027

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024006783.1	2e-59	protein RKD3
Swissprot	Q9FGD1	3e-59	RKD3_ARATH; Protein RKD3
TrEMBL	V4K031	4e-58	V4K031_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006393899.1	6e-59	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-61	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]