PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA8G00057

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 25177.3 Da PI: 6.8021

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA8G00057	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1.1e-19	56	109	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ ++e++A++lgL+ rqV vWFqNrRa++k+ AA8G00057 56 KRKLTDEQVNMLEFSFGNEHKLESGRKERIAAELGLDPRQVAVWFQNRRARWKN 109 4589************************************************95 PP
2	HD-ZIP_I/II	117.6	7.2e-38	55	146	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+l++eqv++LE sF +e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + +++Le++v +L+e+l+e AA8G00057 55 RKRKLTDEQVNMLEFSFGNEHKLESGRKERIAAELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDTTVLTQCQLESQVIKLKEQLSE 146 8****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.8E-17	53	114	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.04E-17	55	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.953	55	110	IPR001356	Homeobox domain
CDD	cd00086	2.94E-14	55	111	No hit	No description
Pfam	PF00046	5.4E-17	56	109	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.7E-20	57	117	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	81	90	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	85	108	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	90	106	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MNLETEQLVI AAAYPYTKNI IAGESKVQPR RRRKRRTKES PETTEMEDGL ITMIRKRKLT 60 DEQVNMLEFS FGNEHKLESG RKERIAAELG LDPRQVAVWF QNRRARWKNK KLEEEYAKLK 120 NHHDTTVLTQ CQLESQVIKL KEQLSEAQSE IRRLSERLEE KSSNSSSSSL SVEANNAPID 180 FEFAPETNYN NYPFYMLDNN YYVQNMECWD GLYV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	35	RRRRKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269\|PubMed:15567172}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00591	DAP	Transfer from AT5G66700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA8G00057

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269\|PubMed:15567172, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_201471.1	4e-92	homeobox 53
Swissprot	Q9LVR0	3e-93	ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBL	A0A178ULJ9	9e-91	A0A178ULJ9_ARATH; HB53
STRING	AT5G66700.1	1e-91	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12602	17	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66700.1	2e-81	homeobox 53

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]