PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00234
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 195aa    MW: 21958.1 Da    PI: 4.1963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00234genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-18555155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++ykGVr +k +g+Wv+eIr p++   r r++lg+f++a +Aa+a +aa  +l+g
  AA8G00234  5 PKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSFDSAIKAARAFDAALYCLRG 55
               79*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.36E-28565No hitNo description
PfamPF008471.1E-10555IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-19664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-28664IPR001471AP2/ERF domain
PROSITE profilePS5103221.18663IPR001471AP2/ERF domain
SMARTSM003804.6E-29669IPR001471AP2/ERF domain
PRINTSPR003678.2E-9718IPR001471AP2/ERF domain
PRINTSPR003678.2E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDISPKYKGV RKRKWGKWVS EIRLPNSRER IWLGSFDSAI KAARAFDAAL YCLRGSEANF  60
NFPDNPPVIP GGRSLTPQQI QVAAYRFACE EIVQEEEGAE QGENSARGEI SSSGGDTCEQ  120
VVEETRVNEG ETTAFSPFLW EENLVGPTSI SDEMTTFSPL EFGFFTEDSA HNQLSSHFYD  180
DEDDLTTHDI NLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-156631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00234
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874038.17e-73ethylene-responsive transcription factor ERF016
SwissprotQ9C5913e-72ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLD7M0S12e-71D7M0S1_ARALL; Uncharacterized protein
STRINGBostr.26527s0082.1.p5e-74(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-70ERF family protein