PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA8G00264

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 243aa MW: 27519.9 Da PI: 6.5201

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA8G00264	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.9	6.3e-43	5	135	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lp GfrF Pt++el+++yL++++eg + ++++vi+ +d+++++P +Lp+ +++++ ++w+fF++r++++a+g r++r+t sgyWkatg+ +v+s++ AA8G00264 5 LPIGFRFFPTEDELISFYLRNQLEGGNDPMHRVIPVLDVFDLHPTQLPHvageRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSAD 104 699*************************99************546666666888************************************ PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyr 127 ++ +g+kkt+vfy+g+ap+g+kt+W m+ey+ AA8G00264 105 NRIIGIKKTMVFYTGKAPTGRKTKWKMNEYK 135 ****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-48	4	161	IPR003441	NAC domain
PROSITE profile	PS51005	47.72	5	161	IPR003441	NAC domain
Pfam	PF02365	1.5E-22	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MSDELPIGFR FFPTEDELIS FYLRNQLEGG NDPMHRVIPV LDVFDLHPTQ LPHVAGERCR 60 GDAEQWFFFV PRQEREARGG RPSRTTGSGY WKATGSPGPV FSADNRIIGI KKTMVFYTGK 120 APTGRKTKWK MNEYKAIDET VHVSTIPKLR HEFSLCRVYI TSGSSRAFDR RPVDNFQTDQ 180 RMVTSDGAGT SSTPATIVTA ERTTTSSPET SISGEENVHV SANVEMVDNL PLYIWEWEQL 240 NWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-32	5	166	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-32	5	166	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-32	5	166	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-32	5	166	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	6e-32	5	166	20	173	NAC domain-containing protein 19
3swm_B	6e-32	5	166	20	173	NAC domain-containing protein 19
3swm_C	6e-32	5	166	20	173	NAC domain-containing protein 19
3swm_D	6e-32	5	166	20	173	NAC domain-containing protein 19
3swp_A	6e-32	5	166	20	173	NAC domain-containing protein 19
3swp_B	6e-32	5	166	20	173	NAC domain-containing protein 19
3swp_C	6e-32	5	166	20	173	NAC domain-containing protein 19
3swp_D	6e-32	5	166	20	173	NAC domain-containing protein 19
4dul_A	6e-32	5	166	17	170	NAC domain-containing protein 19
4dul_B	6e-32	5	166	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA8G00264

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471145.1	1e-133	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-125	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	V4KW25	1e-131	V4KW25_EUTSA; Uncharacterized protein
STRING	XP_006400742.1	1e-132	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-116	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]