PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00317
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 846aa    MW: 93067.8 Da    PI: 6.0275
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00317genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-182684357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR ++k+
  AA8G00317 26 KYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECsilsNIEPKQIKVWFQNRRCRDKQ 84
               56789***************************************************996 PP
2START1488.8e-471623622202
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +f       ++ +ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l +++++
  AA8G00317 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIF-----AISQRSRACGLVSLEPM-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELVYMQTY 255
                7899********************************.....46888************.7777777777***********999999999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rdf+++Ry+ +l  g+ v++++S++     p+    s++vRae+l Sg+li+p+++g+s +++v+hv+l++++++ +lr+l++s+ + ++k+
  AA8G00317 256 APTTLAPaRDFWTLRYTTSLDNGSIVVCERSLSGSGAGPNptsASQFVRAEMLSSGYLIRPCDGGGSIIHIVDHVNLEAWSVPDVLRPLYESSKVVAQKM 355
                ********************************9887777777899******************************************************* PP

                HHHHTXX CS
      START 196 wvatlqr 202
                + a+l++
  AA8G00317 356 TIAALRY 362
                ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4022185IPR001356Homeobox domain
SuperFamilySSF466898.55E-172288IPR009057Homeodomain-like
SMARTSM003899.9E-172389IPR001356Homeobox domain
CDDcd000864.14E-162686No hitNo description
PfamPF000469.2E-162784IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-182881IPR009057Homeodomain-like
CDDcd146863.27E-678117No hitNo description
Gene3DG3DSA:1.20.5.1706.1E-482131No hitNo description
PROSITE profilePS5084826.956152375IPR002913START domain
SuperFamilySSF559611.28E-31161368No hitNo description
SMARTSM002346.5E-37161366IPR002913START domain
Gene3DG3DSA:3.30.530.206.6E-18162360IPR023393START-like domain
PfamPF018522.2E-44162363IPR002913START domain
PfamPF086707.5E-46690845IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MEMMAVANHR ERSSDSMNRH LDSSGKYVRY TSEQVEALER VYAECPKPSS LRRQQLIREC  60
SILSNIEPKQ IKVWFQNRRC RDKQRKEASR LQSVNRKLSA MNKLLMEEND RLQKQVSQLV  120
CENGYMKQQL TTVVTDASCD SVVTTPQHSL RDANSPAGLL SIAEETLAEF LSKATGTAVD  180
WVQMPGMKPG PDSVGIFAIS QRSRACGLVS LEPMKIAEIL KDRPSWFRDC RSLEVFTMFP  240
AGNGGTIELV YMQTYAPTTL APARDFWTLR YTTSLDNGSI VVCERSLSGS GAGPNPTSAS  300
QFVRAEMLSS GYLIRPCDGG GSIIHIVDHV NLEAWSVPDV LRPLYESSKV VAQKMTIAAL  360
RYIRQLAQET NGELVYGLGR QPAVLRTFSQ RLSRGFNDAV NGFNDDGWST LHCDGAEDII  420
VAINSTKHLN TMSSSLSFLG GVLCAKASML LQNVPPAVLI RFLREHRSEW ADFNVDAYSA  480
ATLKAGTYAY PGMRPTRFTG SQIIMPLGHT IEHEEMLEVV RLEGHSLAQE DAFMSRDVHL  540
LQICTGIDEN AVGACSELVF APINEMFPDD APLVPSGFRV IPVDTKMGDG HELLPSNHRT  600
LDLTSSLEVG PSPENVSGNS SSSSSSRCIL TIAFQFPFEN NLQENVASMA CQYVRSVISS  660
VQRVAMAVSP SGVCPSLGSK LSPGSPEAVT LAQWISQSYI HHLGSELLTV DSLGGDSVLK  720
LLWDHQDAIL CCSLKPQPVF MFANQAGLDM LETTLVALQD ITLDKIFDES GRKALCSDFA  780
KLMQQGFACL PSGICVSTMG RHVTYEQAIA WKVFATSEDN NSNNNNNNNN NSVHCLAFSF  840
VNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00317
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013667152.10.0homeobox-leucine zipper protein REVOLUTA
RefseqXP_013667153.10.0homeobox-leucine zipper protein REVOLUTA
RefseqXP_013667154.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A1J3F1X70.0A0A1J3F1X7_NOCCA; Homeobox-leucine zipper protein REVOLUTA (Fragment)
TrEMBLA0A1J3F5L80.0A0A1J3F5L8_NOCCA; Homeobox-leucine zipper protein REVOLUTA (Fragment)
STRINGBra002458.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]