PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00349
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 323aa    MW: 37123.8 Da    PI: 4.5049
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00349genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.4e-13391033098
                ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                k  +  +t++++ g++W++ l  rk+ +++vl +GWk+ +++ +L +++f+ F++dg++ f   + +++
  AA8G00349  39 KSFPENVTVRSRYGKRWRMGL--RKCTEKFVLVNGWKKIARSENLISREFLFFEFDGSNVF--SFCIYD 103
                234557***************..********************************998888..666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-137105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-158105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.36412105IPR003340B3 DNA binding domain
CDDcd100174.88E-1212103No hitNo description
SMARTSM010195.3E-914105IPR003340B3 DNA binding domain
PfamPF023621.2E-1023104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEKGNSSADS IPKFFRVYAP EVHEDDLELP MFLNRFFSKS FPENVTVRSR YGKRWRMGLR  60
KCTEKFVLVN GWKKIARSEN LISREFLFFE FDGSNVFSFC IYDRSMVKRL RSSRQTDEIE  120
VESESDGEEE RGSDVIIPIS DDDDYVTTDN EEDDDAIQDE SDSDKDKAND DIISSNDDII  180
SSNDDYVATN NEEHADNYTA NDNVDDHTIN DDDYAANDNA DHHTINDDDY SAHAANVANR  240
VPAKVIKDYN LKFHESIDIV DPLVKSFGKI KRKVVIEKNG SVYLKGFESI KRRNEVKSSD  300
KMICELRTKN GLVHEIKVHI VNV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAPTransfer from AT5G60130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00349
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.17e-38B3 family protein