PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA932G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family YABBY
Protein Properties Length: 155aa    MW: 17324.6 Da    PI: 10.3719
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA932G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY185.52.8e-57113124170
        YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPek 121
                  vsvP++slf++vtvrCGhCt+lls+n+ ++ ++++a                  ++++++s + + +  s+s+++++lse+ d+++pr+pp irPPek
  AA932G00001   1 VSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPL---------------HKQHTSSSTARIDYGSSSRNNSSLSESVDRDTPRMPP-IRPPEK 82 
                  8*******************************9999883...............3444445555555555666666799**********99.9***** PP

        YABBY 122 rqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  rqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  AA932G00001  83 RQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL 131
                  ***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-551131IPR006780YABBY protein
SuperFamilySSF470956.02E-875124IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-479125IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
VSVPYASLFT LVTVRCGHCT NLLSLNIGVS LHQTSAPPLH KQHTSSSTAR IDYGSSSRNN  60
SSLSESVDRD TPRMPPIRPP EKRQRVPSAY NRFIKEEIQR IKACNPEISH REAFSTAAKN  120
WAHFPHIHFG LKLDSNKKGK QLDQTVAGQK ANGYY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA932G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533261e-77AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077490.12e-97Plant-specific transcription factor YABBY family protein
SwissprotQ9XFB02e-98YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A087HM025e-97A0A087HM02_ARAAL; Uncharacterized protein
STRINGA0A087HM028e-98(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-94YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]