PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA93G00012
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 259aa    MW: 29351 Da    PI: 7.9796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA93G00012genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-1165111354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r+h+e+ErrRR+riNs +++Lr ll  +      K +Ka+ L k+ve +k+L
  AA93G00012  65 RNHKEAERRRRERINSHLNKLRNLLSCN-----SKTDKATLLAKVVERVKEL 111
                 58***********************997.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.84362111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1365131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-965111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-1265121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-1068117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.80E-5165230No hitNo description
Gene3DG3DSA:3.30.70.2602.1E-6165229No hitNo description
SuperFamilySSF550212.44E-6165233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MRESSDQILY SFLTGNELSG AGEYNLTSNL QSLCGSSSSS STCYYYPPAM GEMSKSEDRT  60
LTALRNHKEA ERRRRERINS HLNKLRNLLS CNSKTDKATL LAKVVERVKE LKQQTLQISS  120
NSSDHHHHHH QTLIPSETDE ISVLHDFEDH NYNSNEGNNI IFKASLCCDD RSDLLQDLIK  180
ILESLNMKIL RAEIATLGGR TRSVLIVSAD KEVHGIESLH FLQNALKSLL ERSSKSLMER  240
SSSGERSKRR RALDHIIMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA93G00012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752021.11e-112transcription factor bHLH106-like
RefseqXP_013752093.11e-112transcription factor bHLH106-like
SwissprotO806741e-100BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1J3GMC51e-110A0A1J3GMC5_NOCCA; Uncharacterized protein
STRINGBra004599.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]