PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA93G00176
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 238aa    MW: 26375.7 Da    PI: 9.0296
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA93G00176genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.24.5e-23109214186
    trihelix   1 rWtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                 +Wt+++v++Li a+ +++++ + +                    +kk++W++vsk+m e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ 
  AA93G00176 109 KWTDSMVRLLIMAVFYIGDEAGVSDtidasstkrkscgnnggmlQKKGKWKSVSKAMVEKGFCVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQ 207
                 7**************88888876544555667777889999999**********************************************559999999 PP

    trihelix  80 pyfdqle 86 
                  ++++++
  AA93G00176 208 GLLESMD 214
                 9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-20107205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MESNGLSSVM FSGFSPRMLS LEIPETPQNQ VQFQHQHPCA TGNPVTGAGE RQQHHQTQPV  60
YTYSSSKPKQ LSPLSDDDDR GSGSGSGCNP EDITGTDGKK KFSQWQRMKW TDSMVRLLIM  120
AVFYIGDEAG VSDTIDASST KRKSCGNNGG MLQKKGKWKS VSKAMVEKGF CVSPQQCEDK  180
FNDLNKRYKR VNDILGKGTA CRVVENQGLL ESMDLSAKLK DELRPWQSRS NRATTITI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA93G00176
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407612.11e-100uncharacterized protein LOC18023903
TrEMBLV4LF263e-99V4LF26_EUTSA; Uncharacterized protein
STRINGXP_006407612.11e-100(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.17e-81sequence-specific DNA binding transcription factors