PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA93G00230
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 397aa    MW: 43117.9 Da    PI: 7.3092
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA93G00230genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047187209123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  AA93G00230 187 YQCKTCDRTFPSFQALGGHRASH 209
                 9***********99999998887 PP
2zf-C2H2130.00032264286123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  AA93G00230 264 HECGICGAEFTSGQALGGHMRRH 286
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.77E-8186209No hitNo description
PfamPF139122.3E-12186211IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471187214IPR007087Zinc finger, C2H2
SMARTSM003550.028187209IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-8259286No hitNo description
Gene3DG3DSA:3.30.160.608.2E-4262288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-11263288IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93264288IPR007087Zinc finger, C2H2
SMARTSM003550.047264286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEAAAEAVAA AKEQLLILKG KRTKRARAQS PIPFSIVPPM SLEVPDIEED QSTSIGSKNE  60
DIIINKDTNN VVINDVCYPT GVTSSSSASS SNNNVTLKSS EEEDQDMANC LILLAQGHFL  120
PSYSYNQSQM QPQQQTRQLM ISYQDTGNNN NNNNNNNVYR SSSRRFLETS SANGTTTGGA  180
RAGYYVYQCK TCDRTFPSFQ ALGGHRASHK KPKAAAAAGL HSDDLKKTIY DESVGFHLSN  240
VLTTTPNNNN HRPLYGKSNH NKVHECGICG AEFTSGQALG GHMRRHRGAV VAASTVTVAA  300
TNLTATSVTA NTTLSLSPMS FDRMSDDPVQ VPVKKARSTV VSLDLDLNLP APEDENKVNG  360
LSFASKKEQE QEQTLQQQKE QKSSLVLSTP TLVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA93G00230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640212.11e-168zinc finger protein ZAT5-like
RefseqXP_018514567.11e-168PREDICTED: zinc finger protein ZAT5
TrEMBLA0A397ZEM11e-167A0A397ZEM1_BRACM; Uncharacterized protein
STRINGXP_010484714.11e-165(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-122C2H2 family protein