PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA93G00231
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 1013aa    MW: 113870 Da    PI: 4.4896
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA93G00231genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.5e-52281551128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 l+pGfrFhPtdeelv++yLk+kv +k++++ ++i evdiyk+ePw+L   +++k++++ewyfFs  dkky +g r nrat++gyWkatgkd+e+ + + 
  AA93G00231  28 LAPGFRFHPTDEELVSYYLKRKVLNKPVRF-DAIGEVDIYKHEPWELAvySRLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDREIRR-DI 124
                 579************************999.99**************85448899999*************************************9.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +l g+kktLvf++grap+g +t+Wvmheyrl
  AA93G00231 125 QLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 155
                 9****************************98 PP
2NAM169.31.3e-524545811128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 l+pGfrFhPtdeelv +yLk+k+ +k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs  dkky +g+++nrat++gyWk+tgkd+e+ + ++
  AA93G00231 454 LAPGFRFHPTDEELVRYYLKRKICNKPFKF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSVLDKKYGNGSKTNRATEKGYWKTTGKDREIRN-GS 550
                 579**************************9.99**************95347777888*************************************9.9* PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++vg+kktLv++kgrap+ge+t+Wvmheyrl
  AA93G00231 551 RVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 581
                 *****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5924180IPR003441NAC domain
PROSITE profilePS5100557.98228179IPR003441NAC domain
PfamPF023655.2E-2730155IPR003441NAC domain
SuperFamilySSF1019414.45E-62451604IPR003441NAC domain
PROSITE profilePS5100558.594454604IPR003441NAC domain
PfamPF023652.1E-27456581IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MGRKSVAVVS SPPLPTTVPG TASAATALAP GFRFHPTDEE LVSYYLKRKV LNKPVRFDAI  60
GEVDIYKHEP WELAVYSRLK TRDQEWYFFS ALDKKYGNGA RMNRATNKGY WKATGKDREI  120
RRDIQLLGMK KTLVFHSGRA PDGLRTNWVM HEYRLVEDET DRNGTLQQDA YVLCRVFHKN  180
NIGPPSGNRY APFLEEEWTD GAGALIPGID LKVMADQVPI TANSNEIQSN KDLININEPP  240
KENQMEIEAF KPQDDDGNDD DDDNDDDGMK REHTEDDCPP PSLCILNKEA PLPLLQYKRR  300
RQNESNNSSR ITQQDHCSST TTTTLISSSS AATTAANTAI SALLEFSLMG ITDKPQQEQE  360
QKKKMEDSGL LLTNSKSDPG ESSLIPVIND LQKEIHQMSV ERESFKFEMM SAEAMISILQ  420
SRIDALRQEN EELKKNRKPL ISLTLMGRGS VTSLAPGFRF HPTDEELVRY YLKRKICNKP  480
FKFDAISVTD IYKSEPWDLP DKSKLKSRDL EWYFFSVLDK KYGNGSKTNR ATEKGYWKTT  540
GKDREIRNGS RVVGMKKTLV YHKGRAPRGE RTNWVMHEYR LADKELESTG VQQDAYVLCR  600
IFQKSGSGPK NGEQYGAPFV EEEWEEDDMT YVPDQDAGSE DVGINDDVYV DIDDIDQKPE  660
NLAVYDAIPI PLNFNNGESS NNIDNNYSDS ANFIQPGTNL DSNSYFERPA GSSEEDQKPI  720
IRDGVLQNSS LFQDEQNGCG IQDESTENLP ACNDIFGADT CYNDFPVDNY LNLEPFMDPN  780
NDLPQQNDGL YLETNDLNGT QQDGFDFEDY LTFFDEDDEI TQNLSFDPSQ LIETQDGIAN  840
PEEFIQKPET AEVEKEEAIE GKQVVEEKVK DEASSSRQAA ELPEFEPDSK YPFLKKASHM  900
LGAIPTSAAF ASEYPTKEAA AMRFHSAQSS NSVHITAGMI TISSTSLGSG NNLGWSYDKN  960
TNLDLILSLE NAIAMTGTAK SGTGVTRAVL MFMCFWVILL SVSFKVGTLV SSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-452761019174NAC domain-containing protein 19
3swm_B2e-452761019174NAC domain-containing protein 19
3swm_C2e-452761019174NAC domain-containing protein 19
3swm_D2e-452761019174NAC domain-containing protein 19
3swp_A2e-452761019174NAC domain-containing protein 19
3swp_B2e-452761019174NAC domain-containing protein 19
3swp_C2e-452761019174NAC domain-containing protein 19
3swp_D2e-452761019174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA93G00231
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886650.10.0NAC domain-containing protein 53
SwissprotQ84K000.0NAC78_ARATH; NAC domain-containing protein 78
TrEMBLD7L8Z70.0D7L8Z7_ARALL; ANAC053
STRINGBostr.22252s0010.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31922762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.10.0NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]