PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA9G00062
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 309aa    MW: 34986.3 Da    PI: 9.3123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA9G00062genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000552042391555
                HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++++++ +L++++ +      +K + a++Le+A+  Ik Lq
  AA9G00062 204 KVREKITTLQQIVSPF-----GKTDTASVLEEAIANIKFLQ 239
                5788999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.924189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-8204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-6204246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MIHGYNYNDY LNKTNTGQDH GQGPGHGQGP GHGQGQGWSY ETNPVRYGEL NHEEETGQGL  60
SKLSDLVGKY WSIAPPNPEI DNQNISLYRQ TLEDSNQLGL TGTHSGLTGG FQMEEESSRR  120
FQHDIIRLNR PIMIPNINQS FKPRLKALSL SEFNKDELKI ASPLQESKKK KRFEKKCTEA  180
TKKAKCDSSS FSPPPPPKEL PKGKVREKIT TLQQIVSPFG KTDTASVLEE AIANIKFLQE  240
QVKLLSTPYM KNSIKDPWRG WENKREIKYT DLKSRGLSLV PLSCTPFAYR DDSEADYWSP  300
TFRGGSFYR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA9G00062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866434.14e-88transcription factor bHLH111 isoform X2
SwissprotQ9FYJ66e-89BH111_ARATH; Transcription factor bHLH111
TrEMBLA0A3P5YJ895e-87A0A3P5YJ89_BRACM; Uncharacterized protein
TrEMBLD7KGI39e-88D7KGI3_ARALL; Predicted protein
STRINGAT1G31050.16e-87(Arabidopsis thaliana)
STRINGAl_scaffold_0001_32052e-88(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.14e-76bHLH family protein