PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA9G00116
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family BBR-BPC
Protein Properties Length: 229aa    MW: 25434.8 Da    PI: 10.6933
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA9G00116genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind239.82e-7363227137301
  GAGA_bind 137 ieea.aeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaC 234
                +++  ++e++++++++++q+++kp+++k+  kk+  ++sk+++k++s+ +++++e+k+ ++ +++   ++ s+ P+PvCsCtG++r CYkWG GGWqS+C
  AA9G00116  63 VSQPkPTESRNNNESSTNQSSSKPLKPKQGTKKR--PASKNSKKAASNIPETRRERKNPEInNIDVSRFNVSRHPPPVCSCTGVSRTCYKWGIGGWQSSC 160
                4443034556667778899999999999999888..4444444444444899*********89************************************* PP

  GAGA_bind 235 CtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                Ct+tiS++PLP+st+r+g+R++grKmS+ga+ klL +L +eGydls+pvDLk+hWA+HGtnkfvti+
  AA9G00116 161 CTLTISMFPLPMSTTRPGTRMTGRKMSNGAYVKLLLRLDGEGYDLSKPVDLKNHWARHGTNKFVTIK 227
                ******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.0E-611227IPR010409GAGA-binding transcriptional activator
PfamPF062171.9E-6464227IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MNPYPGRNPK KSVTNRAEET DTKESVTNKA EETGIVTSYV PWYLPAYFPV SRTTTTGAPP  60
SQVSQPKPTE SRNNNESSTN QSSSKPLKPK QGTKKRPASK NSKKAASNIP ETRRERKNPE  120
INNIDVSRFN VSRHPPPVCS CTGVSRTCYK WGIGGWQSSC CTLTISMFPL PMSTTRPGTR  180
MTGRKMSNGA YVKLLLRLDG EGYDLSKPVD LKNHWARHGT NKFVTIKSL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA9G00116
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410714.14e-85protein BASIC PENTACYSTEINE7
SwissprotO822862e-78BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLV4MAM51e-83V4MAM5_EUTSA; Uncharacterized protein
STRINGXP_006410714.12e-84(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-73basic pentacysteine 7