PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA9G00126
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 176aa    MW: 20178.1 Da    PI: 9.9391
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA9G00126genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.7e-28128176250
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50 
                pr+rWt++LH+rFv+ave LGG+e+AtPk+ilelm+vk+Ltl+hvkSHL
  AA9G00126 128 PRMRWTTTLHSRFVHAVELLGGHERATPKSILELMDVKDLTLAHVKSHL 176
                9***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.06E-13125176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-24126176IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-20128176IPR006447Myb domain, plants
PfamPF002494.2E-6129175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MELFPPQPDL SLQISPPSTI DEEKELKLGF WRRGFDSKTS SLISKPNNSN SFDLISLSSN  60
NCNSHQLQQQ YLDGFFPHDL SYLRPISRTT LYHNDLLDSS SSSLCLKPKP NYKTLKSRFP  120
VKRSMRAPRM RWTTTLHSRF VHAVELLGGH ERATPKSILE LMDVKDLTLA HVKSHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-14128176351Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-14128176351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-14128176351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-14128176351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-14128176351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-14128176351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-14128176351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-14128176351Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA9G00126
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934916e-46AB493491.1 Arabidopsis thaliana At1g32240 mRNA for hypothetical protein, partial cds, clone: RAAt1g32240.
GenBankAY0486896e-46AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBankBT0292116e-46BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361268.16e-52PREDICTED: probable transcription factor KAN2 isoform X1
RefseqXP_006361269.15e-52PREDICTED: probable transcription factor KAN2 isoform X2
RefseqXP_009114900.16e-52PREDICTED: probable transcription factor KAN2 isoform X1
RefseqXP_013731603.16e-52probable transcription factor KAN2 isoform X2
RefseqXP_022546636.16e-52probable transcription factor KAN2 isoform X1
SwissprotQ9C6163e-49KAN2_ARATH; Probable transcription factor KAN2
TrEMBLM1BKY01e-50M1BKY0_SOLTU; Uncharacterized protein
TrEMBLM1BKY11e-50M1BKY1_SOLTU; Uncharacterized protein
TrEMBLM4E3A31e-50M4E3A3_BRARP; Uncharacterized protein
STRINGBra023254.1-P2e-51(Brassica rapa)
STRINGPGSC0003DMT4000475322e-51(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53872850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-35G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]