PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA9G00131
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 363aa    MW: 40216.7 Da    PI: 8.0544
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA9G00131genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.7e-12220245126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C++ ++C+FaHg
  AA9G00131 220 WKTRICNKWEITGYCPFAAKCHFAHG 245
                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-1270106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-772105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.39974101IPR000571Zinc finger, CCCH-type
SMARTSM003560.02774100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77139167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-8139166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-7139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.13139166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-14214246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-8216246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173219247IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7219246IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8220245IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MTHRRDSGSD VVHVIPTNDP PPENRFPNLD DNTLWATEDD YNRFWSLNLT TTGDDSASPS  60
KKTRGSQSLI GKPPFKTKLC SKFRTGTCLY LKNCYFAHNI EELRRVSQNW QEEERSIEQP  120
PREEFKIPSL FSSAESGRSY KGRHCKKFYS GEGCPYGETC TFLHDEASRH RESFAISLGP  180
SNGGYGGSSD VRGIGGSSGG SGNVVVVSSG GDENVKPPNW KTRICNKWEI TGYCPFAAKC  240
HFAHGSSGKI CQFLVKFLNR IGLIFCFHGD KSLIVDEFAE LQRFGGGLVE GEEGKTGTST  300
NQETKQTIGQ VDTVTTTVVS SGVQTQRISP AITQKPSGVR TQRKWKGPDK ISRIYGDWID  360
DNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA9G00131
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410700.11e-128zinc finger CCCH domain-containing protein 12
RefseqXP_013733846.11e-127zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-124C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1J3GD841e-132A0A1J3GD84_NOCCA; Zinc finger CCCH domain-containing protein 12
STRINGXP_006410700.11e-127(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-116C3H family protein