PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA9G00191
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB
Protein Properties Length: 244aa    MW: 27021.4 Da    PI: 8.7961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA9G00191genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
        AA9G00191 14 KGAWTKDEDQRLIDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding57.23.9e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eEde++++++ +lG++ W++Ia +++ gRt++++k++w+++
        AA9G00191  67 RGNFSDEEDEIIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.334961IPR017930Myb domain
SMARTSM007171.0E-121363IPR001005SANT/Myb domain
SuperFamilySSF466891.11E-2813108IPR009057Homeodomain-like
PfamPF002498.0E-161461IPR001005SANT/Myb domain
CDDcd001671.20E-101661No hitNo description
PROSITE profilePS5129428.48962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2865116IPR009057Homeodomain-like
SMARTSM007173.6E-1766114IPR001005SANT/Myb domain
PfamPF002494.4E-1667111IPR001005SANT/Myb domain
CDDcd001671.20E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKD EDQRLIDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SDEEDEIIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG  120
IDPLTHRSVN DSVAITDSKT SSSSPVVVVS TPQNGAVEYS FSNLNAVAVK PKTETLSDNG  180
VSTSGTTTDE DLRQNGDCYY SVNNRGHGEI NLDLTLGFGV GSSADSKPWR DPVTAVMAAR  240
LSLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30141167108B-MYB
1h8a_C9e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA9G00191
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397190.21e-138transcription repressor MYB6
SwissprotQ388511e-136MYB6_ARATH; Transcription repressor MYB6
TrEMBLV4LFW21e-136V4LFW2_EUTSA; Uncharacterized protein
STRINGXP_006397190.11e-137(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-134myb domain protein 6