PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC183950.2_FGP002
Common NameLOC103637498, ZEAMMB73_097979
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 138aa    MW: 15118.9 Da    PI: 7.8087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC183950.2_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00045678123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ykC+ C+k+F +   L  H  +H
  AC183950.2_FGP002 56 YKCSLCDKVFASYQALGGHKTSH 78
                       9**********999998888777 PP
2zf-C2H214.97.5e-05103123121
                        EEETTTTEEESSHHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                        ++C+ C+++Fs +  L +Hi+
  AC183950.2_FGP002 103 HQCSLCPRTFSWWQALGSHIQ 123
                        79*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575129No hitNo description
PfamPF139122.2E-135680IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1185683IPR007087Zinc finger, C2H2
SMARTSM003550.00955678IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.9E-1056122No hitNo description
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
PfamPF139120.01103121IPR007087Zinc finger, C2H2
SMARTSM0035519103123IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MALTKPPTAT DDDQAERKYL TSCLIMLSCG LRDGDMANAT REAGATPTSA NMADDYKCSL  60
CDKVFASYQA LGGHKTSHRK PAAAPSDEAS SSGTAYEKEE KLHQCSLCPR TFSWWQALGS  120
HIQGSQFRKE KLFGTYRN
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC183950.2_FG002
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC183950.2_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657892.11e-100zinc finger protein AZF1
TrEMBLK7VA364e-99K7VA36_MAIZE; Zinc finger protein AZF1
STRINGAC183950.2_FGP0021e-100(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-17C2H2 family protein