PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC185108.3_FGP011
Common NameLOC103634372
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 198aa    MW: 20189.8 Da    PI: 9.9719
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC185108.3_FGP011genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-054365123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++Cp+Cgk F +   L  H  +H
  AC185108.3_FGP011 43 FRCPICGKAFASYQALGGHKASH 65
                       89**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.6E-134267IPR007087Zinc finger, C2H2
SuperFamilySSF576674.49E-84365No hitNo description
SMARTSM003550.00624365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6164370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576674.49E-8102129No hitNo description
PfamPF139125.9E-8106129IPR007087Zinc finger, C2H2
SMARTSM003554.3107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDQDDYLSLC LAAALVAASQ QAAGDAPPLR ARAAASELRP LHFRCPICGK AFASYQALGG  60
HKASHRKPAA AAAAYDGKAP SSPSSSGQHQ KGAVAAGIGG ASAGGRHVCT VCHRYFATGQ  120
ALGGHKRFHY LHGPSVPASS LPPSTAGAAA GVGWLDLNLT PLAPDVSFAG VRRRRGEDDE  180
VQSPLPLPAK KHRASTSA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC185108.3_FG011
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC185108.3_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008654133.11e-138zinc finger protein 36
TrEMBLA0A1D6III51e-137A0A1D6III5_MAIZE; Zinc finger protein AZF2
STRINGAC185108.3_FGP0111e-138(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148981718
Representative plantOGRP1961422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.13e-23zinc finger of Arabidopsis thaliana 6