PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC194965.4_FGP004
Common NameGATA12, LOC103630069
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 143aa    MW: 15575 Da    PI: 10.6054
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC194965.4_FGP004genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.7e-192963135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C+ C+tt Tp+WR gp g+++LCnaCG++yrkk++
  AC194965.4_FGP004 29 CVECRTTATPMWRGGPTGPRSLCNACGIRYRKKRR 63
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-142382IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-132664No hitNo description
Gene3DG3DSA:3.30.50.108.8E-152864IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.2E-172963IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.1762959IPR000679Zinc finger, GATA-type
CDDcd002022.01E-112964No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MMMDSAEHQK VMGIAPAAAP AAEAGRPCCV ECRTTATPMW RGGPTGPRSL CNACGIRYRK  60
KRRQELGLDS AKKPQQNQRP PPPQQQQQQE DHCPATSAVA VRDNTKSSRL QVVKKRRVLM  120
GVEEAAVLLM ALSSSSRSTL LHG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC194965.4_FG004
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC194965.4_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280120.0KJ728012.1 Zea mays clone pUT6147 C2C2-GATA transcription factor (GATA12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649382.11e-101GATA transcription factor 23
TrEMBLK7UI231e-100K7UI23_MAIZE; C2C2-GATA transcription factor (Fragment)
STRINGAC194965.4_FGP0041e-100(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-20GATA transcription factor 23