PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC198403.3_FGP001
Common NameEREB106, ZEAMMB73_596429, Zm.132316
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 212aa    MW: 22827.6 Da    PI: 4.4355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC198403.3_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-181765355
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g
  AC198403.3_FGP001 17 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 65
                       9****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-121665IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-311673IPR001471AP2/ERF domain
SMARTSM003801.9E-361679IPR001471AP2/ERF domain
PROSITE profilePS5103223.3931673IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-211673IPR016177DNA-binding domain
CDDcd000183.71E-301773No hitNo description
PRINTSPR003673.2E-121728IPR001471AP2/ERF domain
PRINTSPR003673.2E-125575IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVLDNSAPGV VAAGQSYRGV RKRKWGKWVS EIREPGKKTR IWLGSFESPE MAAVAHDVAA  60
LRLRGREARL NFPGLVHRFR RPATAEPDDV RAAALEAAAQ VRFRPDLVAM QASGGEGGCC  120
FGGAGGSDDT GSPEPLAAGE DDVAWDVLLG TDVEVVESPK MWDELAEAML VAPPAWEGDM  180
EDTDDWAQGN LWDLPVWALG PTGRCSFTSF GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-171277167ATERF1
3gcc_A1e-171277167ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC198403.3_FG001
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC198403.3_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275110.0KJ727511.1 Zea mays clone pUT5370 AP2-EREBP transcription factor (EREB106) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151893.11e-126uncharacterized protein LOC100285530
TrEMBLA0A1D6PRI61e-150A0A1D6PRI6_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
TrEMBLK7TV921e-150K7TV92_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGAC198403.3_FGP0011e-150(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-26ERF family protein