PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC199820.4_FGP006
Common NameLOC103647818, MYBR29
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 153aa    MW: 17833.1 Da    PI: 5.6563
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC199820.4_FGP006genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-10107150447
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WT eE+  ++++ +++G g+W  I+r +  ++t+ q+ s+ qk+
  AC199820.4_FGP006 107 WTREEHRNFLRGLNMYGRGNWMYISRDFVPTKTPMQIYSHAQKF 150
                        *****************************9************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.62E-13101152IPR009057Homeodomain-like
PROSITE profilePS5129311.747102153IPR017884SANT domain
SMARTSM007174.7E-7103153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-8105146IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-11106152IPR006447Myb domain, plants
CDDcd001672.59E-8107151No hitNo description
PfamPF002495.4E-7107149IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDPMFSSEWS VSEIKMAKSL IASRNTSSNL ASDDDASNKK HSDIVDELQA RFPWKGKHEV  60
IGLYVDLTME MINTPPEVGD DGLVLDDDNF GMPVEEQPQM KYTGRFWTRE EHRNFLRGLN  120
MYGRGNWMYI SRDFVPTKTP MQIYSHAQKF FRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC199820.4_FG006
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC199820.4_FGP006
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281970.0KJ728197.1 Zea mays clone pUT6471 MYB-related transcription factor (MYBR29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670548.11e-113transcription factor KUA1
TrEMBLA0A060D7S71e-111A0A060D7S7_MAIZE; Duplicated homeodomain-like superfamily protein (Fragment)
STRINGAC199820.4_FGP0061e-112(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.15e-17MYB_related family protein