PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC201740.3_FGP003
Common NameLOC103638984, ZEAMMB73_653740
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 131aa    MW: 14511.3 Da    PI: 7.0435
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC201740.3_FGP003genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-053252323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C++Cg+ F ++  L  H++ H
  AC201740.3_FGP003 32 CTYCGRKFCTSQALGGHQNAH 52
                       ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.06E-62371No hitNo description
PROSITE profilePS5015711.6143057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEREPEQELD LELTLLPSAW ATQEEAPGFF LCTYCGRKFC TSQALGGHQN AHKYERALAK  60
RRRDIAAALR KHGAPVTRDG QVHAGASPSA RATAGSERGR RPVDELQLQG VPVPWLHQVE  120
RTEELDLSLG L
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1247781e-129root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC201740.3_FG003
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC201740.3_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9600651e-127EU960065.1 Zea mays clone 221533 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465203.13e-44zinc finger protein 2
TrEMBLA0A3L6DGC73e-84A0A3L6DGC7_MAIZE; Zinc finger protein 2
STRINGAC201740.3_FGP0032e-91(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.19e-16C2H2 family protein