PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC203535.4_FGP002
Common NameNAC90, Zm.59648
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 246aa    MW: 26239.4 Da    PI: 8.0881
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC203535.4_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.64.5e-31131451128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk.....kvkaeekewyfFskrdkkya.tgkrknratksgyWka 85 
                        lp GfrF+Ptdeel+ +yL++k+ + +l++  vi+++d+ +++PwdL p+     + +  + e +fF++ +++   +g  + ra+ +g+W+ 
  AC203535.4_FGP002  13 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GVIPDADLARLHPWDLlPAaapggSGADADGERFFFHRPATQCWrKGGGAARAAGTGVWRP 103
                        699***************************.99**************544455542222445889999888776527999************ PP

                NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +gk++ vls   ++ vg+k+tLvf   r +   +t+W mheyrl
  AC203535.4_FGP002 104 SGKETLVLSPrCKRPVGTKRTLVFCPRRGRA--RTHWAMHEYRL 145
                        ********9877889**********655555..9********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-418187IPR003441NAC domain
PROSITE profilePS5100540.19413188IPR003441NAC domain
PfamPF023651.8E-2014145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEGRRPGAPV AGLPIGFRFR PTDEELLLHY LRRKALACPL PAGVIPDADL ARLHPWDLLP  60
AAAPGGSGAD ADGERFFFHR PATQCWRKGG GAARAAGTGV WRPSGKETLV LSPRCKRPVG  120
TKRTLVFCPR RGRARTHWAM HEYRLLPAGL HPYGCAAGAG ANAPPPTNVS SHGGDAAADW  180
VVCRIFRRAR PAHRARLGGG AREELEEEHA AEESPSSCVT DASETLDQEE DDGDEGSSSS  240
TVASSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-221319417171NO APICAL MERISTEM PROTEIN
1ut4_B1e-221319417171NO APICAL MERISTEM PROTEIN
1ut7_A1e-221319417171NO APICAL MERISTEM PROTEIN
1ut7_B1e-221319417171NO APICAL MERISTEM PROTEIN
4dul_A1e-221319417171NAC domain-containing protein 19
4dul_B1e-221319417171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1258650.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC203535.4_FG002
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC203535.4_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699700.0EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674632.11e-177NAC transcription factor ONAC010
TrEMBLA0A1D6N2M51e-175A0A1D6N2M5_MAIZE; NAC domain-containing protein 68
STRINGAC203535.4_FGP0021e-176(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Representative plantOGRP1730523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.24e-26NAC domain containing protein 47