PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AC203957.3_FGP004

Common Name

LOC100381716

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bZIP

Protein Properties

Length: 170aa MW: 19000 Da PI: 9.2243

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AC203957.3_FGP004	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.3	4.4e-15	32	84	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 e +r rrk++NRe+ArrsR+RK++ + L+ v++L+++Nk+L l++ +++ AC203957.3_FGP004 32 EKRRKRRKESNRESARRSRLRKQQHHDDLTSQVDQLKGQNKQLNLALSTTSQN 84 6789***************************************9777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-11	26	85	No hit	No description
SMART	SM00338	2.7E-15	30	94	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.955	32	95	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-12	32	81	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.88E-11	34	86	No hit	No description
CDD	cd14702	7.89E-16	35	83	No hit	No description
PROSITE pattern	PS00036	0	37	52	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MSSGSSFGSS QWTQRSRSAE DDLDLDLQAE MEKRRKRRKE SNRESARRSR LRKQQHHDDL 60 TSQVDQLKGQ NKQLNLALST TSQNLVAVQA QNSVLQTQRM ELASRLGALT EILWCISSST 120 GTAAPPTNPA MVNGGVTTTW SWSDASGDIL GASAWNHQQQ QPIDAYRCYY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	38	KRRKRRK
2	34	39	RKRRKE
3	46	52	RRSRLRK
4	46	53	RRSRLRKQ

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AC203957.3_FG004

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AC203957.3_FGP004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062069	0.0	BT062069.1 Zea mays full-length cDNA clone ZM_BFb0212E11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001167995.1	1e-122	uncharacterized LOC100381716
TrEMBL	C0HIB3	1e-121	C0HIB3_MAIZE; BZIP transcription factor 11
TrEMBL	K4JC86	1e-121	K4JC86_MAIZE; BZIP-type transcription factor (Fragment)
STRING	AC203957.3_FGP004	1e-122	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3740	32	76
Representative plant	OGRP10708	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	3e-14	basic leucine-zipper 44

Link Out ? help Back to Top
Phytozome	AC203957.3_FGP004
Entrez Gene	100381716