PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC204212.4_FGP001
Common NameMYBR78
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 96aa    MW: 10320.1 Da    PI: 8.4851
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC204212.4_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.7e-09451347
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                       +WT+    l+ +a + + ++   +W+ +ar +g g+t++++k ++  +
  AC204212.4_FGP001  4 SWTESQNNLFERALAVYDKDtpdRWHNVARAVGCGKTAEDVKRHYKYL 51
                       7********************************99**********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.739156IPR017884SANT domain
SMARTSM007171.7E-8154IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-12358IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-4459IPR009057Homeodomain-like
PfamPF002496.1E-7451IPR001005SANT/Myb domain
CDDcd001672.79E-6452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MGSSWTESQN NLFERALAVY DKDTPDRWHN VARAVGCGKT AEDVKRHYKY LKTDVKHIET  60
EEGGRGSQSS SPAGAGAGGS GSSSSSSWGR DNGDKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-20260865RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.342001e-160meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC204212.4_FG001
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC204212.4_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0867151e-160BT086715.2 Zea mays full-length cDNA clone ZM_BFb0164B15 mRNA, complete cds.
GenBankKJ7283401e-160KJ728340.1 Zea mays clone pUT6621 MYB-related transcription factor (MYBR78) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353638.15e-65uncharacterized LOC100284980
SwissprotQ1A1731e-24RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A060CZ591e-63A0A060CZ59_MAIZE; MYB-related transcription factor (Fragment)
TrEMBLA0A3L6EML31e-63A0A3L6EML3_MAIZE; Protein RADIALIS-like 6
STRINGAC204212.4_FGP0012e-64(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-26RAD-like 6