PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC206217.2_FGP006
Common NameLOC103631557
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 186aa    MW: 19749.5 Da    PI: 8.9418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC206217.2_FGP006genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00133254123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C ++F++   L  H  +H
  AC206217.2_FGP006 32 FECKTCRRRFPTFQALGGHRASH 54
                       89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.56E-83054No hitNo description
PfamPF139123.7E-123156IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0743259IPR007087Zinc finger, C2H2
SMARTSM003550.533254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
SuperFamilySSF576673.56E-885112No hitNo description
SMARTSM003551.190112IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-890114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
METGAVPMLL SQRQQGGART AAAGLGARGR VFECKTCRRR FPTFQALGGH RASHRRPKPY  60
PYPYGVGDPG LLRRTRLDEP RESAAGPRLH GCPICGLEFA VGQALGGHMR RHRRTSLAAE  120
SECELRSGDA TSVEEANVGG AGCASGICLD LSLAPSGNCA KCRNDAVLGN TAHCERKSLI  180
LDCPPL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC206217.2_FG006
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC206217.2_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650662.11e-131zinc finger protein ZAT12
TrEMBLA0A1D6M5X01e-130A0A1D6M5X0_MAIZE; Zinc finger protein ZAT11
STRINGAC206217.2_FGP0061e-131(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-24C2H2 family protein