PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC207342.3_FGP001
Common NameZEAMMB73_869323
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Nin-like
Protein Properties Length: 394aa    MW: 43488.3 Da    PI: 6.4449
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC207342.3_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.91.3e-25241289452
             RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         i +++l+kyF +pi+ AA+e++v+lTvLK++CR++G++RWPhRk+ksl
  AC207342.3_FGP001 241 YIGFDELRKYFCMPITRAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 289
                        5899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.552223310IPR003035RWP-RK domain
PfamPF020421.6E-20242289IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAMVPCGDDT DWCHVLDNFN LLLCSSSCSP NAMANRAEDC LPISAAPPGP GHHQSCCKNE  60
VVLEASCDGA FAAADCLSSA LTNLQREDDS FYLPMYSAPP AVGDEYFSDL LAPDADGIDE  120
ALLMPFSDID LQVFDSDDEH RPPVDQMVNM IPPAVLHHPS TAGTQNGGAV HAHQKAMAVI  180
DDSCFRRGAS GVEMAVVRHH GEPRQGSSSV APVPPPSLPG TRARRSDGRS ARAGKTTKLD  240
YIGFDELRKY FCMPITRAAR EMNVGLTVLK KRCRELGVAR WPHRKMKSLK SLMANVQEMG  300
NVMSSVAVQQ ELAALETYCT LMEDNPWIEL TDRTKKLRQA CFKERYKRRR AAEVNVMDMD  360
RIYCFGQHHH QQLLPPTTSS SDDRHGQCSR SFGY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC207342.3_FG001
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC207342.3_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039336e-54AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBankAP0042586e-54AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBankAP0149576e-54AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126096e-54CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398728.10.0uncharacterized protein LOC103635991
TrEMBLK7VIS70.0K7VIS7_MAIZE; Protein RKD4
STRINGAC207342.3_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128882330
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.14e-35RWP-RK domain-containing protein