PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC207888.3_FGP009
Common NameLOC107161152
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 683aa    MW: 74595.8 Da    PI: 4.2556
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC207888.3_FGP009genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260682.1e-211297188
             DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqle 88
                       +C aC++lr +C++ Cv+a yf ae+   fa+vh +FGasnv+k+ +++  +e+r+ a+++lv eA+a+ardP    v+ +  lq q  
  AC207888.3_FGP009 12 PCGACRTLRCRCVPRCVFAAYFSAEE---FAAVHGVFGASNVSKMPEDIgLPEQRRLAVDTLVEEARAWARDPTFDRVSYLCILQDQEV 97
                       7********************99876...*******************988999********************999999988887754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.84111112IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-221296IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MPADGGAVAG APCGACRTLR CRCVPRCVFA AYFSAEEFAA VHGVFGASNV SKMPEDIGLP  60
EQRRLAVDTL VEEARAWARD PTFDRVSYLC ILQDQEVNDK YREQVDDARE EFDAEVASEP  120
VDVAAAGLEA QAQAQVDAAL QHEQDYRLLG GWGATTGEQQ HLVTQDAENE HGIILGHGHP  180
AELSQEILQL QELLDMAELS RNRKQQIIQK TEMGQYWDAA AGGAREHDLL TMMQQAPAAA  240
WQHQYPAPQY AGIRGGPGGH QEMPQPMEEA CTAEFATGMG IMSQQFASAQ PYHDHDPAAV  300
PHASPWLQRM PEAQQPAAAS QVASEQDMLL LLLLQQHQVA AAGLMSAGGA RQLDNVAAQY  360
DDTEVALGYG YGHPDMHQHQ HQQVAAAGQV AGVDDDMNPR EMTQQQHAQQ GLDIALGNGH  420
LDGETEAMLQ ELAALLEQAG KQETIRKQQG VATGMGQWDA VTGIAWEQDV TTMTHQQSPD  480
AAAWLQVQEM LEQMEEASST PEFAEIIAWQ AEARYAQEEL AITLGNDHPD WSTQDILQAQ  540
ELFAMAELAR KQEMVRNLVA AAALAREQEM IAQQQQHPEA QYSGTELDIS LWQGPGHGHP  600
YWHQPTMQQM LQEKQLPTVQ QLLQEQQLAD AIGFGTHQAS TTLVPQYANG EHGSGTGAAM  660
AFQSPGSDKD APFPFPFPLY VGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-1991128111LOB family transfactor Ramosa2.1
5ly0_B4e-1991128111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC207888.3_FG009
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC207888.3_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282670.0KJ728267.1 Zea mays clone pUT6544 LOB transcription factor (LOB2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306148.10.0uncharacterized protein LOC107161152
TrEMBLA0A1D6F9Z00.0A0A1D6F9Z0_MAIZE; Uncharacterized protein
STRINGAC207888.3_FGP0090.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16457913
Representative plantOGRP1954922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-09LBD family protein