PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC208434.3_FGP001
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 330aa    MW: 36674.3 Da    PI: 5.3702
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC208434.3_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-06284305426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        ++C+++ar  +Ck G++C+F Hg
  AC208434.3_FGP001 284 RPCMYYAR-EYCKNGSSCRFFHG 305
                        69******.***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.493280307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-5283308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5284308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSRLNALITL GIALPIGVHS MEKGALSPKK ASPRTRILKG NTRGCTGICM CLDCCTFCLH  60
ADQAFESSRN AAMWNSGTQE LPAEISDGVQ WDVALFSDQV ATDTTDVLQR ILRNSDGTNS  120
EAIPRQQRDP RIDRSHWNDD DRIPIQFVRL LLFEFGCPWR PAVCPPPPPS PAGSVDKTVK  180
FWDLETFELI GSSGPEFHGA PNARVVRWRC LHPQSDLDWR IHGEPWMLLH ICNSPFATAD  240
WLGYDGGTDT FYADEYDCWS PAGAGGAHRW SFSLSDAESA ASWRPCMYYA REYCKNGSSC  300
RFFHGVPEDD AAEWDMAVMR AKALAAAPPT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.841763e-40endosperm| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC208434.3_FG001
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC208434.3_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407777e-38BT040777.1 Zea mays full-length cDNA clone ZM_BFc0128C11 mRNA, complete cds.
GenBankBT0636937e-38BT063693.1 Zea mays full-length cDNA clone ZM_BFc0095O06 mRNA, complete cds.
GenBankEU9697437e-38EU969743.1 Zea mays clone 335011 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGAC208434.3_FGP0010.0(Zea mays)