PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC209257.4_FGP006
Common NameLOC103630470
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 205aa    MW: 22008.4 Da    PI: 6.8574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC209257.4_FGP006genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-1862110355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr+p   + r kr++lg+f+ + +Aa a+++a+ +++g
  AC209257.4_FGP006  62 YRGVRQRR-WGKWVAEIREP---N-RgKRHWLGTFDNPVDAAVAYDRAAVSIHG 110
                        9****998.**********8...3.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.89E-2761118No hitNo description
SuperFamilySSF541712.75E-2261120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-3061119IPR001471AP2/ERF domain
PROSITE profilePS5103221.41761118IPR001471AP2/ERF domain
SMARTSM003801.3E-3261124IPR001471AP2/ERF domain
PRINTSPR003671.5E-116273IPR001471AP2/ERF domain
PfamPF008472.2E-1062110IPR001471AP2/ERF domain
PRINTSPR003671.5E-11100120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGVGLNRQEM GRAAATAAAP TASAAGRQQA LASRSATAKP FAERSRPAQR GMGGPDNTRH  60
NYRGVRQRRW GKWVAEIREP NRGKRHWLGT FDNPVDAAVA YDRAAVSIHG AHAHLNFPCS  120
AATTADASLE HEAKPMVAAA ALGGGGAEAV SQRQEDDDPH DIAMYIDFDA VFDMVPFCHG  180
IKREDCQHEG FDGDAVHSPL WALGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1762119664ATERF1
3gcc_A4e-1762119664ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC209257.4_FG006
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC209257.4_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649742.11e-150dehydration-responsive element-binding protein 2D
TrEMBLA0A1D6M6D51e-130A0A1D6M6D5_MAIZE; Dehydration-responsive element-binding protein 2E
STRINGAC209257.4_FGP0061e-149(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-23ERF family protein