PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC209784.3_FGP011
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 682aa    MW: 72410.2 Da    PI: 10.1071
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC209784.3_FGP011genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.55.5e-11296370986
           trihelix   9 aLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +Li+a  e+  +l rg+l+ p+W+ev++++    +  +  +s +qCk++++ l+k+yk +k+   +        ++yfd+l+
  AC209784.3_FGP011 296 TLIDAWGERFVALDRGSLRHPQWQEVAEVVssrdSYSKAPKSDVQCKNRIDTLKKKYKVEKAKHDS-------DWRYFDRLD 370
                        799999************************85444455567889***************9998886.......59****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF821531.96E-934146IPR000782FAS1 domain
PROSITE profilePS502139.46435176IPR000782FAS1 domain
Gene3DG3DSA:2.30.180.102.2E-737135IPR000782FAS1 domain
SuperFamilySSF821534.45E-15183304IPR000782FAS1 domain
PROSITE profilePS5021312.999202332IPR000782FAS1 domain
Gene3DG3DSA:2.30.180.101.6E-10203294IPR000782FAS1 domain
PfamPF024694.4E-10215293IPR000782FAS1 domain
PfamPF138371.5E-18295372No hitNo description
SuperFamilySSF821534.45E-15573606IPR000782FAS1 domain
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MARGLGAAPV SSCLALGAAA AVLLVAAALP SPASGVDVTA VLSAFPNFAD FARLLASTPV  60
ASELSGRSSL TLLAVPNANL PQSPSAFVAS AGADIADVLR YHVLLEYLFP FDLARLSPSG  120
KLVTTLFQTT GRAPSDFGAV NLTVGGNSTV VVRSPAPSPG SNATVLGAVT AVPYNLSVLA  180
VGGLIIPSGF DLAASESRPP PPVNITRVLT DARGFNVAAS MLQASGVASE FEADEHSAGI  240
TVFVPTDDAF AGLPATDRLQ SLPAERKAVV LRFHVLHSYY PLGSLESSTA SATSSTLIDA  300
WGERFVALDR GSLRHPQWQE VAEVVSSRDS YSKAPKSDVQ CKNRIDTLKK KYKVEKAKHD  360
SDWRYFDRLD DLLAPVLLKP NSSSSSAAAA TAAAAARSAG PMVPPRINFP QRTRTPLHSS  420
AGAKWRMPSP LPQPSASSDS SDGFPPSAVA NGKRQRVEEP AAAAADNGAE SSVSRAQGLR  480
ELAQAIRRLG EVYERVESAK RDQELRMERE RLDSARQLEE QRVQFSTSMP RSSRITRTAQ  540
APPGAMTTAA TRTRKLRRMR KTKRKRASDC SPLQQWNGIV QASITRTVFD QNPVAVFAVS  600
KVLLPKEMFG RGDSGNTAMA PPSVAMAPRD AGSEKTPQTR LSSPPDLHSE DSESSASLLT  660
AKGTWWCIGL MYLQLHLLLS LV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1553565RKLRRMRKTKRKR
2558565MRKTKRKR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC209784.3_FG011
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC209784.3_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9743920.0EU974392.1 Zea mays clone 448043 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674840.10.0fasciclin-like arabinogalactan protein 4
TrEMBLA0A1D6N7H50.0A0A1D6N7H5_MAIZE; Trihelix transcription factor ASIL2
STRINGAC209784.3_FGP0110.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-27sequence-specific DNA binding transcription factors