PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AC209819.3_FGP009

Common Name

DOF44, ZEAMMB73_564100, Zm.131948

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Dof

Protein Properties

Length: 206aa MW: 21595.6 Da PI: 10.9046

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AC209819.3_FGP009	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.4	1.1e-36	67	122	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprC s++tkfCy+nny+++qPr+fC+aC+ryWt+GGa+rnvP+G+grrkn+ AC209819.3_FGP009 67 RLPCPRCLSRDTKFCYFNNYNVNQPRHFCRACHRYWTAGGAIRNVPIGSGRRKNRP 122 689**************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.6E-30	68	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.127	68	122	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-24	69	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MPVPGRAAAA CTGAAGIKLF GKVITTPPHH AGAAPPRLQQ AAAASGRGSA DLLEEVARAR 60 AAAAEVRLPC PRCLSRDTKF CYFNNYNVNQ PRHFCRACHR YWTAGGAIRN VPIGSGRRKN 120 RPVLLPPPAP HAVTATDNSR RSGAGSPPVF GSVFTAPYQQ LGAPTQFTTS PAYAATAPLG 180 TTGQCLWLVA TADHRSVASG RAFDLI

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AC209819.3_FG009

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269\|PubMed:19619493}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AC209819.3_FGP009

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727006	0.0	KJ727006.1 Zea mays clone pUT3982 C2C2-DOF transcription factor (DOF44) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008656439.1	1e-147	cyclic dof factor 4
Swissprot	O22967	1e-34	CDF4_ARATH; Cyclic dof factor 4
TrEMBL	A0A1D6FTB4	1e-146	A0A1D6FTB4_MAIZE; Dof zinc finger protein DOF1.5
TrEMBL	K7VH90	1e-146	K7VH90_MAIZE; C2C2-DOF transcription factor (Fragment)
STRING	AC209819.3_FGP009	1e-147	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	7e-30	Dof family protein

Link Out ? help Back to Top
Phytozome	AC209819.3_FGP009

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]