PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC211478.3_FGP004
Common NameLOC103652236, NAC100
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 154aa    MW: 17299.7 Da    PI: 10.2601
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC211478.3_FGP004genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.16.5e-3199354128
                NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ewyfFs rd+kyatg r+nratksgyWkatgkd+ +++           + ++vg++ktLvfy+gr+p+g+kt+Wvmhe+r+
  AC211478.3_FGP004   9 STNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKDRVIHTPcswpaaaaghHCTVVGMRKTLVFYRGRTPNGVKTSWVMHEFRM 93 
                        678*************************************9988888776655556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.2671112IPR003441NAC domain
SuperFamilySSF1019411.07E-375113IPR003441NAC domain
PfamPF023652.0E-151293IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVADVAKLST NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIHTP CSWPAAAAGH  60
HCTVVGMRKT LVFYRGRTPN GVKTSWVMHE FRMENPHTPP KEDWVLCRVF YKKKADAMDY  120
ADCSDQDAIA VHMPRGSADP RGAAVAASGR GGRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-29111761169NO APICAL MERISTEM PROTEIN
1ut4_B7e-29111761169NO APICAL MERISTEM PROTEIN
1ut7_A7e-29111761169NO APICAL MERISTEM PROTEIN
1ut7_B7e-29111761169NO APICAL MERISTEM PROTEIN
3swm_A8e-29111764172NAC domain-containing protein 19
3swm_B8e-29111764172NAC domain-containing protein 19
3swm_C8e-29111764172NAC domain-containing protein 19
3swm_D8e-29111764172NAC domain-containing protein 19
3swp_A8e-29111764172NAC domain-containing protein 19
3swp_B8e-29111764172NAC domain-containing protein 19
3swp_C8e-29111764172NAC domain-containing protein 19
3swp_D8e-29111764172NAC domain-containing protein 19
4dul_A7e-29111761169NAC domain-containing protein 19
4dul_B7e-29111761169NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC211478.3_FG004
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC211478.3_FGP004
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283360.0KJ728336.1 Zea mays clone pUT6617 NAC transcription factor (NAC100) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676087.21e-113NAC domain-containing protein 21/22
SwissprotQ84TE62e-38NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A060D2T51e-112A0A060D2T5_MAIZE; NAC domain containing protein 74 (Fragment)
STRINGAC211478.3_FGP0041e-113(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2506755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-51NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]