PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC211702.2_FGP002
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 236aa    MW: 25516.9 Da    PI: 8.4958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC211702.2_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000675375123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ykC+ C+k+F +   L  H  +H
  AC211702.2_FGP002 53 YKCTLCDKVFASYQALGGHKTRH 75
                       9***********99999998887 PP
2zf-C2H212.10.0005999121123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+++Fs+   L  H+ +H
  AC211702.2_FGP002  99 HQCSLCSRTFSSGQALGGHMTSH 121
                        79******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.56E-1053121No hitNo description
PfamPF139123.2E-125377IPR007087Zinc finger, C2H2
SMARTSM003550.015375IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8065380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
PfamPF139124.9E-1299123IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.76299126IPR007087Zinc finger, C2H2
SMARTSM003550.02599121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MALTKPDNQA EWEYLTSCLI MLSRGLRDGD AANATRAVGA APTSAKMADG YKYKCTLCDK  60
VFASYQALGG HKTRHRKPPA AAAPSDGASS SSTAHEKLHQ CSLCSRTFSS GQALGGHMTS  120
HRKPPPPVVV LDFDLNMPAE AEPESRPRRR MPSGHAQTTM LLVTDPPVVP TAAGRCLTRR  180
SRLLWWQHSS PLSYMTPTHI STCHRSLHDT DSCFSFSTSD GGDAGMQVEL LAPSCY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC211702.2_FG002
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC211702.2_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020406636.13e-54zinc finger protein AZF1
TrEMBLA0A1D6F0411e-123A0A1D6F041_MAIZE; Zinc finger protein AZF1
STRINGAC211702.2_FGP0021e-174(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-19C2H2 family protein