PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC214648.3_FGP005
Common NameLOC103635941, ZEAMMB73_346319
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 212aa    MW: 22149.3 Da    PI: 7.4492
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC214648.3_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601383.3e-43361351100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpe +r da+ss+vyeA ar+rdPvyG++g i++lq+q++ lka
  AC214648.3_FGP005  36 PCAACKILRRRCVDRCVLAPYFPPTEPHKFATAHRVFGASNIIKLLQELPEAHRGDAVSSMVYEAAARVRDPVYGCAGAIWQLQRQVNDLKA 127
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++e
  AC214648.3_FGP005 128 QLARAHAE 135
                        ****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.87935136IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-4336133IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDCSSDTAVC AVAVAAAAAP SPPSSSPRPP APALSPCAAC KILRRRCVDR CVLAPYFPPT  60
EPHKFATAHR VFGASNIIKL LQELPEAHRG DAVSSMVYEA AARVRDPVYG CAGAIWQLQR  120
QVNDLKAQLA RAHAELAGAR AQHAHLLALL CVEVAASSPP SYDCAAGYSA SPSRHQLAAV  180
VAANPVMADA VDGALHQTQA GPVSWAEEAL WT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-44181361111LOB family transfactor Ramosa2.1
5ly0_B4e-44181361111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC214648.3_FG005
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC214648.3_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656534.11e-150LOB domain-containing protein 1
SwissprotQ9SK082e-60LBD11_ARATH; LOB domain-containing protein 11
TrEMBLK7V2441e-149K7V244_MAIZE; Putative LOB domain-containing family protein
STRINGAC214648.3_FGP0051e-149(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-48LOB domain-containing protein 1